'ALPHAPICKLE is a programme for extracting the outputs of DeepMind's ALPHAFOLD protein prediction algorithm from the pickle (.pkl) file output.' 'AlphaFold can predict protein structures with atomic accuracy even where no similar structure is known' Whatever the sequencing technique, whatever the organism.' Given a set of aligned reads (BAM files) and an annotation file (GTF format), the tool produces plots of the raw and normalized distributions of those reads among genomic categories (stop codon, 5'-UTR, CDS, intergenic, etc.) and biotypes (protein coding genes, miRNA, tRNA, etc.). 'ALFA provides a global overview of features distribution composing NGS dataset(s). 'AGOUTI uses paired-end RNA-seq reads to guide genome scaffolding and improve gene annotation.' 'AGFusion is a python package for annotating gene fusions from the human or mouse genomes.' 'Suite of tools to handle gene annotations in any GTF/GFF format.' 'Aesara is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. The resulting derivative evaluation routines may be called from C/C++, Fortran, or any other language that can be linked with C. 'The package ADOL-C (Automatic Differentiation by OverLoading in C++) facilitates the evaluation of first and higher derivatives of vector functions that are defined by computer programs written in C or C++.
#Crystalmaker osu ocio code#
'The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.' 'ADDA is an open-source parallel implementation of the discrete dipole approximation, capable to simulate light scattering by particles of arbitrary shape and composition in a wide range of particle sizes.' 'AdapterRemoval searches for and removes remnant adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal.' 'ACTC converts independent triangles into triangle strips or fans.' 'Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler' 'This repository is a collection of Python library code for building Python applications.' The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.' 'Abseil is an open-source collection of C++ library code designed to augment the C++ standard library.
'Mass screening of contigs for antimicrobial and virulence genes'
'ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis.'
#Crystalmaker osu ocio software#
'Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA.' 'AAF constructs phylogenies directly from unassembled genome sequence data, bypassing both genome assembly and alignment.' 'A software package for algebraic, geometric and combinatorial problems on linear spaces'